STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxpPyridoxal (pyridoxine, vitamin B6) phosphatase; Belongs to the HAD-like hydrolase superfamily. (314 aa)    
Predicted Functional Partners:
pnpo
Pyridoxamine 5'-phosphate oxidase.
   
 
 0.937
LOC101171384
Pyridoxal (pyridoxine, vitamin B6) kinase b.
    
 0.929
LOC101155341
Pyridoxal (pyridoxine, vitamin B6) kinase a.
    
 0.929
aox1
Aldehyde oxidase beta.
     
 0.904
LOC101174256
Phosphatase, orphan 2.
     
  0.900
nudt8
Nudix (nucleoside diphosphate linked moiety X)-type motif 8.
  
  
 0.575
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
  
 
 0.527
xylb
Xylulokinase homolog (H. influenzae).
  
  
 0.504
pgls
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
  
 
 0.496
LOC101160408
Family with sequence similarity 174 member B.
      
 0.485
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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