STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000028712Uncharacterized protein. (1831 aa)    
Predicted Functional Partners:
LOC101158422
Mical-like 2b.
    
 0.918
sqstm1
Sequestosome 1.
    
 0.905
Micall2
Calponin-homology (CH) domain-containing protein.
     
  0.900
RAB8A
RAB8A, member RAS oncogene family.
     
 
0.900
LOC101170877
RAB8A, member RAS oncogene family.
     
 
0.900
c9orf72
Zgc:100846.
    
 0.680
LOC101165127
UDENN FLCN/SMCR8-type domain-containing protein.
    
 0.674
smcr8
Smith-Magenis syndrome chromosome region, candidate 8a.
    
 0.674
wdr41
WD repeat domain 41.
     
  0.650
rab3il1
RAB3A interacting protein (rabin3)-like 1.
    
 0.595
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.