STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105356811Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (324 aa)    
Predicted Functional Partners:
oxsm
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.525
fdx2
Ferredoxin 2.
   
 0.488
fdx1
2Fe-2S ferredoxin-type domain-containing protein.
   
 0.488
mcat
Malonyl CoA:ACP acyltransferase (mitochondrial).
  
 
 0.460
sord
Sorbitol dehydrogenase.
  
 
 0.440
coq3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
   
 0.440
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.433
LOC105356225
Retinol binding protein 2b, cellular; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
   
 
 0.404
LOC101166154
Retinol binding protein 2a, cellular; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
   
 
 0.404
gtpbp6
GTP binding protein 6 (putative).
   
  
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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