LOC101170171 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101170171

Zeta chain of T cell receptor associated protein kinase 70. (668 aa)

Predicted Functional Partners:

LOC101175223

0.966

H2LR21_ORYLA

0.862

ENSORLP00000038465

0.862

LOC101161323

0.828

tyrobp

0.798

ENSORLP00000038018

0.793

ENSORLP00000040537

0.793

cbl

0.777

grb2

0.767

LOC101167946

0.764

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000038018	LOC101167946	ENSORLP00000038018	ENSORLP00000016263	Uncharacterized protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.429
ENSORLP00000038018	LOC101170171	ENSORLP00000038018	ENSORLP00000028913	Uncharacterized protein.	Zeta chain of T cell receptor associated protein kinase 70.	0.793
ENSORLP00000038018	LOC101175223	ENSORLP00000038018	ENSORLP00000041925	Uncharacterized protein.	Uncharacterized protein.	0.451
ENSORLP00000038018	tyrobp	ENSORLP00000038018	ENSORLP00000040436	Uncharacterized protein.	Uncharacterized protein.	0.915
ENSORLP00000038465	H2LR21_ORYLA	ENSORLP00000038465	ENSORLP00000008518	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSORLP00000038465	LOC101161323	ENSORLP00000038465	ENSORLP00000043696	Uncharacterized protein.	Ig_4 domain-containing protein.	0.995
ENSORLP00000038465	LOC101170171	ENSORLP00000038465	ENSORLP00000028913	Uncharacterized protein.	Zeta chain of T cell receptor associated protein kinase 70.	0.862
ENSORLP00000038465	LOC101175223	ENSORLP00000038465	ENSORLP00000041925	Uncharacterized protein.	Uncharacterized protein.	0.981
ENSORLP00000040537	LOC101167946	ENSORLP00000040537	ENSORLP00000016263	Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.429
ENSORLP00000040537	LOC101170171	ENSORLP00000040537	ENSORLP00000028913	Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide.	Zeta chain of T cell receptor associated protein kinase 70.	0.793
ENSORLP00000040537	LOC101175223	ENSORLP00000040537	ENSORLP00000041925	Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide.	Uncharacterized protein.	0.451
ENSORLP00000040537	tyrobp	ENSORLP00000040537	ENSORLP00000040436	Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide.	Uncharacterized protein.	0.915
H2LR21_ORYLA	ENSORLP00000038465	ENSORLP00000008518	ENSORLP00000038465	Uncharacterized protein.	Uncharacterized protein.	0.540
H2LR21_ORYLA	LOC101161323	ENSORLP00000008518	ENSORLP00000043696	Uncharacterized protein.	Ig_4 domain-containing protein.	0.995
H2LR21_ORYLA	LOC101170171	ENSORLP00000008518	ENSORLP00000028913	Uncharacterized protein.	Zeta chain of T cell receptor associated protein kinase 70.	0.862
H2LR21_ORYLA	LOC101175223	ENSORLP00000008518	ENSORLP00000041925	Uncharacterized protein.	Uncharacterized protein.	0.981
LOC101161323	ENSORLP00000038465	ENSORLP00000043696	ENSORLP00000038465	Ig_4 domain-containing protein.	Uncharacterized protein.	0.995
LOC101161323	H2LR21_ORYLA	ENSORLP00000043696	ENSORLP00000008518	Ig_4 domain-containing protein.	Uncharacterized protein.	0.995
LOC101161323	LOC101170171	ENSORLP00000043696	ENSORLP00000028913	Ig_4 domain-containing protein.	Zeta chain of T cell receptor associated protein kinase 70.	0.828
LOC101161323	LOC101175223	ENSORLP00000043696	ENSORLP00000041925	Ig_4 domain-containing protein.	Uncharacterized protein.	0.993