STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175077Sulfotransferase; Belongs to the sulfotransferase 1 family. (398 aa)    
Predicted Functional Partners:
kera
Keratocan.
     
 0.765
lum
Lumican.
     
 0.678
ogn
Osteoglycin, paralog a.
     
 0.538
fam210b
Family with sequence similarity 210 member B.
   
  
 0.509
fmod
Fibromodulin a.
     
 0.488
chst8
Carbohydrate sulfotransferase.
      
 0.485
ntan1
Uncharacterized protein.
      
 0.483
ubiad1
UbiA prenyltransferase domain containing 1.
      
 0.442
bgn
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
     
 0.422
aspn
Asporin.
     
 0.422
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.