STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167466Heterogeneous nuclear ribonucleoprotein K, like. (498 aa)    
Predicted Functional Partners:
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.983
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.979
LOC101167735
RRM domain-containing protein.
   
 0.976
LOC101163114
RRM domain-containing protein.
   
 0.976
rbmx
RNA binding motif protein X-linked.
   
 0.966
LOC101174914
Uncharacterized protein.
   
 0.960
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
   
 0.960
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
  
  
 
0.901
desi1
Desumoylating isopeptidase 1a.
    
   0.832
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 0.796
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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