LOC111946374 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111946374

Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (208 aa)

Predicted Functional Partners:

kl

0.588

klb

0.588

LCT

0.588

lctl

0.588

ENSORLP00000029856

0.588

Lct

0.588

LOC101159420

0.588

LOC101166830

0.578

LOC101160271

0.570

egf

0.568

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000029856	LOC111946374	ENSORLP00000029856	ENSORLP00000029058	Lactase.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.588
LCT	LOC111946374	ENSORLP00000022648	ENSORLP00000029058	Lactase.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.588
LOC101159420	LOC111946374	ENSORLP00000044444	ENSORLP00000029058	Lactase-like a; Belongs to the glycosyl hydrolase 1 family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.588
LOC101160271	LOC111946374	ENSORLP00000013485	ENSORLP00000029058	Si:ch73-174h16.4.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.570
LOC101166830	LOC111946374	ENSORLP00000042108	ENSORLP00000029058	Glucosidase, beta, acid 3 (gene/pseudogene); Belongs to the glycosyl hydrolase 1 family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.578
LOC111946374	ENSORLP00000029856	ENSORLP00000029058	ENSORLP00000029856	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Lactase.	0.588
LOC111946374	LCT	ENSORLP00000029058	ENSORLP00000022648	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Lactase.	0.588
LOC111946374	LOC101159420	ENSORLP00000029058	ENSORLP00000044444	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Lactase-like a; Belongs to the glycosyl hydrolase 1 family.	0.588
LOC111946374	LOC101160271	ENSORLP00000029058	ENSORLP00000013485	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Si:ch73-174h16.4.	0.570
LOC111946374	LOC101166830	ENSORLP00000029058	ENSORLP00000042108	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Glucosidase, beta, acid 3 (gene/pseudogene); Belongs to the glycosyl hydrolase 1 family.	0.578
LOC111946374	Lct	ENSORLP00000029058	ENSORLP00000037238	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Lactase.	0.588
LOC111946374	egf	ENSORLP00000029058	ENSORLP00000034297	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Epidermal growth factor.	0.568
LOC111946374	kl	ENSORLP00000029058	ENSORLP00000004579	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Klotho.	0.588
LOC111946374	klb	ENSORLP00000029058	ENSORLP00000005540	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Klotho beta.	0.588
LOC111946374	lctl	ENSORLP00000029058	ENSORLP00000029193	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Lactase-like b; Belongs to the glycosyl hydrolase 1 family.	0.588
Lct	LOC111946374	ENSORLP00000037238	ENSORLP00000029058	Lactase.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.588
egf	LOC111946374	ENSORLP00000034297	ENSORLP00000029058	Epidermal growth factor.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.568
kl	LOC111946374	ENSORLP00000004579	ENSORLP00000029058	Klotho.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.588
klb	LOC111946374	ENSORLP00000005540	ENSORLP00000029058	Klotho beta.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.588
lctl	LOC111946374	ENSORLP00000029193	ENSORLP00000029058	Lactase-like b; Belongs to the glycosyl hydrolase 1 family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.588