STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vwa1Von Willebrand factor A domain containing 1. (540 aa)    
Predicted Functional Partners:
LOC101166836
Desmin a; Belongs to the intermediate filament family.
   
 
 0.529
rgma
Repulsive guidance molecule BMP co-receptor a.
      
 0.502
LOC101164062
JunB proto-oncogene, AP-1 transcription factor subunit b.
    
 
 0.496
LOC101166428
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.482
LOC101167327
FAM20C golgi associated secretory pathway kinase.
    
  0.479
LOC101163577
FAM20C golgi associated secretory pathway kinase a.
    
  0.479
LOC101169057
Transgelin; Belongs to the calponin family.
   
  
 0.461
LOC101166566
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.459
LOC101165017
Cysteine-rich protein 2.
   
  
 0.458
Tep1
Uncharacterized protein.
    
 0.412
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.