STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc30a1Solute carrier family 30 member 1a. (475 aa)    
Predicted Functional Partners:
slc30a6
Solute carrier family 30 member 6.
    
 
 0.756
slc39a13
Solute carrier family 39 member 13.
   
 0.737
slc39a6
Solute carrier family 39 member 6.
  
 0.721
slc39a14
Solute carrier family 39 member 14.
  
 0.715
slc39a8
Solute carrier family 39 member 8.
  
 0.706
SLC39A12
Solute carrier family 39 member 12.
  
 0.704
slc39a4
ZIP4_domain domain-containing protein.
  
 0.692
rd3
Retinal degeneration 3, GUCY2D regulator.
      
 0.598
lpgat1
Lysophosphatidylglycerol acyltransferase 1.
   
  
 0.592
Kcns3
Potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3b; Belongs to the potassium channel family.
      
 0.589
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.