STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165002C1q domain-containing protein. (497 aa)    
Predicted Functional Partners:
LOC101154896
Zgc:113232.
  
  
 
0.630
col9a1
Collagen, type IX, alpha 1b.
  
  
 
0.628
LOC101162214
Fibrillar collagen NC1 domain-containing protein.
  
  
 
0.614
ENSORLP00000030516
annotation not available
  
     0.530
ENSORLP00000027031
Uncharacterized protein.
  
     0.527
LOC101157725
Collectin subfamily member 10.
  
 
  0.513
ENSORLP00000041124
Uncharacterized protein.
  
 
  0.501
ENSORLP00000033929
Uncharacterized protein.
  
     0.467
Tep1
Uncharacterized protein.
    
 0.412
ENSORLP00000040907
TROVE domain-containing protein.
    
 0.405
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.