STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157152PDZ domain containing 7a. (976 aa)    
Predicted Functional Partners:
LOC101167616
Usher syndrome 1C.
     
0.687
LOC101156094
Whirlin b.
     
0.656
whrn
Whirlin a.
     
0.656
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.589
adgrv1
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.583
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.583
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.577
ift172
Intraflagellar transport 172.
    
 0.572
PDZD7
Uncharacterized protein.
  
  
 
0.553
ift88
Intraflagellar transport 88 homolog.
    
 0.539
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.