STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168392Zinc finger, RAN-binding domain containing 1b. (758 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.828
ubc
Ubiquitin B.
   
 0.807
rps27a
Ribosomal protein S27a.
   
 0.800
ubxn7
UBX domain protein 7.
   
 
 0.761
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.660
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
  0.660
LOC101172593
Tumor necrosis factor a (TNF superfamily, member 2).
   
 0.643
apc2
APC regulator of WNT signaling pathway 2.
    
  0.619
apc
APC regulator of WNT signaling pathway.
    
  0.619
LOC101166590
Uncharacterized protein.
   
 0.596
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.