STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aldh16a1Aldehyde dehydrogenase 16 family, member A1. (793 aa)    
Predicted Functional Partners:
abat
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.957
agxt2
Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.949
aoc1
Amine oxidase.
   
 0.942
LOC101156175
Amine oxidase.
   
 0.942
maob
Amine oxidase.
  
 
 0.938
LOC101175668
Amine oxidase.
  
 
 0.938
hadh
Hydroxyacyl-CoA dehydrogenase.
  
 0.935
ACSF3
Acyl-CoA synthetase family member 3.
  
 0.934
aldh6a1
Aldehyde dehydrogenase 6 family member A1.
  
0.934
LOC101158320
Aldedh domain-containing protein.
  
0.934
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.