STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lsm14aLSM14 domain-containing protein. (119 aa)    
Predicted Functional Partners:
H2MGK1_ORYLA
LSM14A mRNA processing body assembly factor b.
 
   
  0.952
eif4enif1
Eukaryotic translation initiation factor 4E transporter.
   
 
 0.889
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 
 0.845
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.833
LOC101166148
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.833
dhx36
DEAH (Asp-Glu-Ala-His) box polypeptide 36.
   
  
 0.822
ddx1
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
   
 
 0.734
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
   
 
 0.709
LOC101167942
Uncharacterized protein.
    
 
 0.694
cpeb1
Cytoplasmic polyadenylation element binding protein 1b.
   
 0.694
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.