STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160672RBR-type E3 ubiquitin transferase. (1288 aa)    
Predicted Functional Partners:
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.639
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.615
rps27a
Ribosomal protein S27a.
    
 0.611
rnf216
Ring finger protein 216.
    
 0.544
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.531
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
  0.531
birc6
Baculoviral IAP repeat containing 6.
    
 0.522
Birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.522
cwf19l2
CWF19 like cell cycle control factor 2.
      
 0.457
sae1
SUMO1 activating enzyme subunit 1.
     
 0.455
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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