STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159172Si:ch211-93g23.2. (282 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
  0.625
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.597
bysl
Bystin-like.
   
 0.541
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.534
ENSORLP00000029432
Mitochondrial ribosomal protein S5.
    
 0.534
tsr1
TSR1 ribosome maturation factor.
   
 0.527
rps24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
  0.514
LOC101173617
Malate synthase-like.
   
  
 0.513
rps6
Ribosomal protein S6.
   
  0.502
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
 0.498
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.