STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem196Uncharacterized protein. (206 aa)    
Predicted Functional Partners:
sp4
Sp4 transcription factor.
      
 0.800
itgb8
Integrin beta; Belongs to the integrin beta chain family.
      
 0.576
sp8
Uncharacterized protein.
      
 0.504
tmem242
Transmembrane protein 242.
      
 0.495
slc25a40
Solute carrier family 25 member 40; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.460
urb1
URB1 ribosome biogenesis homolog.
      
 0.457
abcf3
ATP-binding cassette, sub-family F (GCN20), member 3.
      
 0.455
pxylp1
2-phosphoxylose phosphatase 1; Belongs to the histidine acid phosphatase family.
      
 0.444
abca2
ATP-binding cassette, sub-family A (ABC1), member 2.
      
 0.439
mbip
MAP3K12 binding inhibitory protein 1.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.