STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156228Phosphodiesterase. (850 aa)    
Predicted Functional Partners:
pde6g
Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.
    
 0.614
LOC101160964
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 0.489
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 0.489
prkx
Protein kinase X-linked; Belongs to the protein kinase superfamily.
   
 0.489
LOC101163742
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
   
 0.489
LOC101170876
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 0.489
pde8a
Phosphodiesterase.
    
0.427
pde8b
Phosphodiesterase.
    
0.427
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.