STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpd52l2Uncharacterized protein. (227 aa)    
Predicted Functional Partners:
tpd52
Tumor protein D52.
    
  
0.620
mal2
Mal, T cell differentiation protein 2 (gene/pseudogene).
   
 
 0.573
gabpb2
GA binding protein transcription factor subunit beta 2a.
    
  0.570
nub1
Negative regulator of ubiquitin-like proteins 1.
      
 0.560
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
      
 0.559
pyroxd2
Pyridine nucleotide-disulphide oxidoreductase domain 2.
      
 0.559
ppp5c
Serine/threonine-protein phosphatase.
      
 0.558
tpd52l1
Tpd52 like 1.
    
 
0.548
snapin
SNAP associated protein.
   
 
  0.543
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
     
 0.417
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.