STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158464Rap guanine nucleotide exchange factor (GEF) 1b. (1184 aa)    
Predicted Functional Partners:
crk
CRK proto-oncogene, adaptor protein.
    
 0.842
crkl
V-crk avian sarcoma virus CT10 oncogene homolog-like.
    
 0.842
LOC110016423
Uncharacterized protein.
    
 0.842
grb2
Growth factor receptor-bound protein 2b.
   
 0.838
nedd9
Neural precursor cell expressed, developmentally down-regulated 9.
    
 0.703
bcar1
BCAR1 scaffold protein, Cas family member.
    
 0.703
LOC101167529
RAP1A, member of RAS oncogene family b.
    
 0.662
LOC101172864
Uncharacterized protein.
    
 0.662
LOC101171247
RAP1A, member of RAS oncogene family a.
    
 0.662
pdgfrb
Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
    
 0.627
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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