STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scaf1SR-related CTD-associated factor 1. (1335 aa)    
Predicted Functional Partners:
INSC
INSC spindle orientation adaptor protein.
   
  
 0.839
sh3pxd2b
SH3 and PX domains 2B.
      
 0.830
LOC101159141
Proline rich 12a.
   
  
 0.702
hmmr
Hyaluronan-mediated motility receptor (RHAMM).
    
 
 0.668
apbb3
Amyloid beta (A4) precursor protein-binding, family B, member 3.
    
 
 0.642
ankrd6
Ankyrin repeat domain 6b.
   
 
 0.593
LOC101155682
Troponin I type 2a (skeletal, fast), tandem duplicate 2.
      
 0.558
med25
Mediator complex subunit 25.
   
  
 0.511
LOC101155537
Si:ch73-105b23.6.
  
     0.469
LOC101161056
TFIIS central domain-containing protein.
  
  
 0.461
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.