STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101154950Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2b. (266 aa)    
Predicted Functional Partners:
a1cf
Apobec1 complementation factor.
     
 0.681
rbm47
RNA binding motif protein 47.
     
 0.628
LOC101156458
Apolipoprotein Ba.
      
 0.619
GADD45B
Growth arrest and DNA damage inducible beta.
      
 0.520
ada
Adenosine deaminase.
   
  
 0.511
aicda
Activation-induced cytidine deaminase.
     
0.503
LOC101167500
Myosin, light chain 1, alkali; skeletal, fast.
   
  
 0.464
ampd1
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
   
  
 0.449
hnrnpr
Heterogeneous nuclear ribonucleoprotein R.
     
 0.439
syncrip
Synaptotagmin binding, cytoplasmic RNA interacting protein, like.
     
 0.439
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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