rhbdf1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rhbdf1

Rhomboid 5 homolog 1a (Drosophila). (893 aa)

Predicted Functional Partners:

polr3k

0.723

kank2

0.668

nprl3

0.662

mgrn1

0.647

aanat

0.618

UBE2O

0.606

arhgap17

0.599

snrnp25

0.595

cdip1

0.593

lcmt1

0.591

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UBE2O	aanat	ENSORLP00000043456	ENSORLP00000028585	Ubiquitin conjugating enzyme E2 O.	N-acetyltransferase domain-containing protein.	0.545
UBE2O	cdip1	ENSORLP00000043456	ENSORLP00000006451	Ubiquitin conjugating enzyme E2 O.	Cell death-inducing p53 target 1.	0.587
UBE2O	kank2	ENSORLP00000043456	ENSORLP00000006721	Ubiquitin conjugating enzyme E2 O.	KN motif and ankyrin repeat domains 2.	0.587
UBE2O	mgrn1	ENSORLP00000043456	ENSORLP00000037639	Ubiquitin conjugating enzyme E2 O.	Mahogunin, ring finger 1b.	0.509
UBE2O	nprl3	ENSORLP00000043456	ENSORLP00000006539	Ubiquitin conjugating enzyme E2 O.	NPR3-like, GATOR1 complex subunit.	0.588
UBE2O	rhbdf1	ENSORLP00000043456	ENSORLP00000030276	Ubiquitin conjugating enzyme E2 O.	Rhomboid 5 homolog 1a (Drosophila).	0.606
UBE2O	snrnp25	ENSORLP00000043456	ENSORLP00000006436	Ubiquitin conjugating enzyme E2 O.	Small nuclear ribonucleoprotein 25.	0.569
aanat	UBE2O	ENSORLP00000028585	ENSORLP00000043456	N-acetyltransferase domain-containing protein.	Ubiquitin conjugating enzyme E2 O.	0.545
aanat	arhgap17	ENSORLP00000028585	ENSORLP00000031048	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.400
aanat	kank2	ENSORLP00000028585	ENSORLP00000006721	N-acetyltransferase domain-containing protein.	KN motif and ankyrin repeat domains 2.	0.615
aanat	mgrn1	ENSORLP00000028585	ENSORLP00000037639	N-acetyltransferase domain-containing protein.	Mahogunin, ring finger 1b.	0.635
aanat	nprl3	ENSORLP00000028585	ENSORLP00000006539	N-acetyltransferase domain-containing protein.	NPR3-like, GATOR1 complex subunit.	0.548
aanat	polr3k	ENSORLP00000028585	ENSORLP00000043807	N-acetyltransferase domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.640
aanat	rhbdf1	ENSORLP00000028585	ENSORLP00000030276	N-acetyltransferase domain-containing protein.	Rhomboid 5 homolog 1a (Drosophila).	0.618
arhgap17	aanat	ENSORLP00000031048	ENSORLP00000028585	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.400
arhgap17	kank2	ENSORLP00000031048	ENSORLP00000006721	Uncharacterized protein.	KN motif and ankyrin repeat domains 2.	0.443
arhgap17	lcmt1	ENSORLP00000031048	ENSORLP00000003832	Uncharacterized protein.	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	0.529
arhgap17	mgrn1	ENSORLP00000031048	ENSORLP00000037639	Uncharacterized protein.	Mahogunin, ring finger 1b.	0.596
arhgap17	nprl3	ENSORLP00000031048	ENSORLP00000006539	Uncharacterized protein.	NPR3-like, GATOR1 complex subunit.	0.419
arhgap17	polr3k	ENSORLP00000031048	ENSORLP00000043807	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.452