STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zfand5Zinc finger, AN1-type domain 5a. (208 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.734
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
   
 0.730
rps27a
Ribosomal protein S27a.
    
 0.594
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.504
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
 0.504
lbh
LBH regulator of WNT signaling pathway.
      
 0.501
hsf4
Heat shock transcription factor 4.
      
 0.501
rab21
RAB21, member RAS oncogene family.
   
 
 0.482
mier1
Mesoderm induction early response 1b, transcriptional regulator.
      
 0.476
LOC101169674
SKI family transcriptional corepressor 1.
      
 0.453
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.