STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162981Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (953 aa)    
Predicted Functional Partners:
LOC101160964
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
 0.655
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
 0.655
LOC101163742
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
   
 
 0.655
LOC101170876
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
 0.655
LGALS4
Galectin.
   
  
 0.594
LOC101172654
Uncharacterized protein.
   
  
 0.591
LOC101161235
Troponin I4b, tandem duplicate 2.
   
  
 0.591
LOC101167333
Uncharacterized protein.
   
  
 0.591
LOC101172899
Troponin I4a.
   
  
 0.591
c1h19orf67
Si:ch211-214c7.5.
      
 0.588
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.