STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157348Trinucleotide repeat containing adaptor 6C2. (1908 aa)    
Predicted Functional Partners:
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.782
LOC101156100
Uncharacterized protein; Belongs to the argonaute family.
    
 0.774
LOC101165653
Uncharacterized protein; Belongs to the argonaute family.
    
 0.774
LOC101167465
Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily.
    
 0.774
LOC101157320
Argonaute RISC catalytic component 3a; Belongs to the argonaute family.
    
 0.774
LOC101169483
Argonaute RISC component 1; Belongs to the argonaute family.
    
 0.774
H2LC37_ORYLA
Uncharacterized protein.
    
 0.772
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
   
 0.772
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
    
 0.771
POLR2E
RNA polymerase II subunit E.
    
 0.771
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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