STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbrg1Transforming growth factor beta regulator 1. (545 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.797
rbbp5
Retinoblastoma binding protein 5.
    
 0.775
tsku
Tsukushi small leucine rich proteoglycan homolog (Xenopus laevis).
      
 0.729
P2RY6
Pyrimidinergic receptor P2Y6.
      
 0.720
ARHGEF17
Rho guanine nucleotide exchange factor (GEF) 17.
   
  
 0.697
hspa13
Heat shock protein 70 family, member 13.
    
 
 0.696
p2ry2
Purinergic receptor P2Y2, tandem duplicate 1; Belongs to the G-protein coupled receptor 1 family.
      
 0.669
cops2
COP9 signalosome subunit 2.
   
  
 0.650
cenpn
Centromere protein N.
   
 0.649
rb1cc1
RB1-inducible coiled-coil 1.
   
 
 0.587
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.