STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pum2Pumilio 2. (1199 aa)    
Predicted Functional Partners:
nanos1a
NANOS1A; Belongs to the nanos family.
   
 
 0.907
LOC101170379
Cytochrome c oxidase copper chaperone COX17.
    
 
 0.792
nanos2
Nanos-type domain-containing protein; Belongs to the nanos family.
   
 
 0.747
nanos3
NANOS3; Belongs to the nanos family.
   
 
 0.747
cnot8
CCR4-NOT transcription complex, subunit 8.
    
 
 0.716
LOC101165240
CCR4-NOT transcription complex, subunit 7.
    
 
 0.716
gak
Cyclin G associated kinase.
   
 0.706
edaradd
EDAR-associated death domain.
   
 
 0.680
dicer1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
    
 
 0.665
inip
Ints3 and nabp interacting protein.
      
 0.649
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.