STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
necab1N-terminal EF-hand calcium binding protein 1. (346 aa)    
Predicted Functional Partners:
KCNIP4
Potassium voltage-gated channel interacting protein 4.
   
 0.564
gnao1
Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b.
    
 0.522
Wdr90
WD_REPEATS_REGION domain-containing protein.
   
 0.478
ENSORLP00000042816
Uncharacterized protein.
   
 0.478
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
cdh13
Cadherin 13, H-cadherin (heart).
    
 0.464
LOC101168685
Tyrosine-protein kinase receptor.
   
 0.428
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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