STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cntn5Contactin 5. (1124 aa)    
Predicted Functional Partners:
ptprg
Carbonic anhydrase XVI b.
    
 0.635
H2M2S3_ORYLA
Protein tyrosine phosphatase receptor type Ga.
    
 0.598
LOC101172288
Amyloid beta (A4) precursor protein b.
   
 
 0.580
APP
Amyloid beta precursor protein.
   
 
 0.580
LOC101164215
Uncharacterized protein.
    
0.525
l1cam
L1 cell adhesion molecule, paralog a.
    
0.525
LOC101160163
Uncharacterized protein.
    
0.525
LOC101164207
Uncharacterized protein.
    
0.525
LOC101171409
Uncharacterized protein.
    
0.525
nfasc
Neurofascin homolog (chicken) a.
    
0.525
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.