STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scnm1Sodium channel modifier 1. (250 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.844
rnf113a
Uncharacterized protein.
   
   0.835
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.832
sf3b3
Splicing factor 3b, subunit 3.
    
   0.831
sf3b2
Splicing factor 3b, subunit 2.
    
   0.830
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.830
prpf8
Pre-mRNA processing factor 8.
    
   0.830
sf3b6
Splicing factor 3b, subunit 6.
    
   0.811
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.663
rbm48
RNA binding motif protein 48.
    
 
 0.633
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.