STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168499Uncharacterized protein. (679 aa)    
Predicted Functional Partners:
SHISA6
Shisa family member 6.
  
  
 
0.558
grin2c
Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.
     
  0.540
LOC101156644
Si:dkey-183j2.10; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
     
  0.540
GRIK2
Glutamate ionotropic receptor kainate type subunit 2.
     
  0.540
LOC101163953
Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.
     
  0.540
LOC101171999
Glutamate ionotropic receptor AMPA type subunit 3.
     
  0.540
grik4
Glutamate receptor, ionotropic, kainate 4.
     
  0.540
LOC101161218
Calcium channel, voltage-dependent, gamma subunit 3a.
     
  0.540
LOC101158221
Glutamate receptor, ionotropic, AMPA 3a.
     
  0.540
LOC101163507
Glutamate receptor, ionotropic, AMPA 4a.
     
  0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.