STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dennd5aDENN/MADD domain containing 5A. (1301 aa)    
Predicted Functional Partners:
rab28
Uncharacterized protein.
     
 0.584
itfg1
Integrin alpha FG-GAP repeat containing 1.
      
 0.559
avl9
AVL9 homolog (S. cerevisiase).
      
 0.558
LOC101158129
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
     
 0.539
rab6b
Uncharacterized protein.
    
 
 0.530
RAB41
Uncharacterized protein.
    
 
 0.530
LOC101156359
RAB6B, member RAS oncogene family.
    
 
 0.530
rab6a
RAB6A, member RAS oncogene family.
    
 
 0.530
LOC101159377
Zgc:171482.
   
  
 0.404
ZMAT4
Zinc finger, matrin-type 4b.
   
  
 0.404
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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