STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klf15Kruppel-like factor 15. (562 aa)    
Predicted Functional Partners:
LOC101158830
Kv channel interacting protein 2.
    
 0.617
KCNIP2
Potassium voltage-gated channel interacting protein 2.
    
 0.617
pparg
Uncharacterized protein.
   
 0.558
rxra
Retinoid X receptor, alpha a.
    
 0.552
LOC101169121
Peroxisome proliferator-activated receptor gamma, coactivator 1 beta.
     
 0.507
LOC100125506
Retinoid x receptor, beta b.
    
 0.478
ctdnep1
CTD nuclear envelope phosphatase 1b.
    
 
 0.456
rps27a
Ribosomal protein S27a.
    
  0.443
acap1
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1.
      
 0.438
mef2a
Myocyte enhancer factor 2aa.
   
 
 0.417
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.