STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx9Sorting nexin. (623 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
     
 0.933
igf2r
Insulin-like growth factor 2 receptor.
     
 0.752
snx2
Sorting nexin 2.
   
 0.726
snx5
Sorting nexin 5.
     
 0.695
snx6
Sorting nexin; Involved in several stages of intracellular trafficking.
     
 0.693
synj1
Synaptojanin 1.
   
 
 0.693
fuca2
Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.
   
  
 0.686
hip1
Huntingtin interacting protein 1.
     
 0.667
snx33
Sorting nexin.
  
 
0.646
SNX18
Sorting nexin.
  
 
0.646
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.