STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166279Rhomboid 5 homolog 1b (Drosophila). (901 aa)    
Predicted Functional Partners:
kank2
KN motif and ankyrin repeat domains 2.
      
 0.811
lcmt1
Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.
      
 0.799
nprl3
NPR3-like, GATOR1 complex subunit.
      
 0.741
ngb
Neuroglobin; Belongs to the globin family.
   
  
 0.688
aqp8
Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.622
mpg
N-methylpurine DNA glycosylase.
     
 0.604
mgrn1
Mahogunin, ring finger 1b.
      
 0.585
aanat
N-acetyltransferase domain-containing protein.
      
 0.562
arhgap17
Uncharacterized protein.
   
  
 0.540
mb
Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
   
  
 0.535
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.