STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exd3Exonuclease 3'-5' domain containing 3. (892 aa)    
Predicted Functional Partners:
LOC101168767
DBF4-type domain-containing protein.
    
 
 0.569
zfyve28
Zinc finger, FYVE domain containing 28.
      
 0.560
rbm46
RNA binding motif protein 46.
      
 0.560
exd1
3'-5' exonuclease domain-containing protein.
      
 0.491
rer1
Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
      
 0.454
LOC101165233
Ig-like domain-containing protein.
    
 0.452
Amigo3
Adhesion molecule with Ig-like domain 3.
    
 0.452
ENSORLP00000033873
THAP-type domain-containing protein.
   
 0.436
amigo1
Adhesion molecule with Ig-like domain 1.
    
 0.405
plk2
Serine/threonine-protein kinase PLK.
   
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.