STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
e2f8E2F transcription factor 8. (908 aa)    
Predicted Functional Partners:
LOC101158988
E2F transcription factor 7.
  
  
0.684
bmpr2
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
      
 0.675
flt1
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
      
 0.675
dnajb6
DnaJ heat shock protein family (Hsp40) member B6b.
      
 0.675
itgav
Integrin, alpha V; Belongs to the integrin alpha chain family.
      
 0.675
phlda2
Pleckstrin homology-like domain, family A, member 2.
      
 0.675
LOC101161906
Transmembrane p24 trafficking protein 2.
      
 0.675
tfdp1
Transcription factor.
    
 
 0.656
rbl1
Retinoblastoma-like 1 (p107).
   
 
 0.548
rb1
Retinoblastoma 1.
   
 
 0.548
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.