STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmbr1lLimb development membrane protein 1-like; Belongs to the LIMR family. (492 aa)    
Predicted Functional Partners:
dusp28
Dual specificity phosphatase 28.
      
 0.623
setd1b
SET domain containing 1B, histone lysine methyltransferase a.
      
 0.616
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.586
LOC101169359
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 
 0.580
eos2
IKAROS family zinc finger 4.
      
 0.580
ikzf4
Uncharacterized protein.
      
 0.576
LOC101174545
Si:dkey-69o16.5.
      
 0.570
mettl22
Methyltransferase like 22.
   
  
 0.567
WDR33
WD repeat domain 33.
    
 
 0.554
rps26
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
      
 0.542
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.