STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opgaTNFR-Cys domain-containing protein. (365 aa)    
Predicted Functional Partners:
LOC101167049
CD40 ligand; Belongs to the tumor necrosis factor family.
   
 0.976
LOC101161466
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
   
 0.969
LOC101159737
Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.
    
 0.909
LOC105354544
TNF superfamily member 14; Belongs to the tumor necrosis factor family.
   
 
  0.907
opgb
Uncharacterized protein.
  
  
0.906
LOC101159531
Tumor necrosis factor b (TNF superfamily, member 2).
   
 0.733
ENSORLP00000036680
Ig-like domain-containing protein.
   
 0.721
tnfrsf11a
Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.
   
0.640
drd3
Dopamine receptor D3; Belongs to the G-protein coupled receptor 1 family.
    
 0.475
tnfsf12
TNF superfamily member 12; Belongs to the tumor necrosis factor family.
   
 
 0.418
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.