STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162870Dynactin 1a. (1440 aa)    
Predicted Functional Partners:
dctn2
Dynactin 2 (p50).
   
 0.977
LOC101164183
Dynactin 3 (p22).
   
 0.969
actr10
Actin related protein 10; Belongs to the actin family.
    
 0.962
LOC101175334
Actin related protein 1, centractin.
   
 0.957
dctn4
Dynactin 4.
    
 0.956
dctn5
Dynactin 5.
    
 0.956
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.939
DCTN6
Dynactin subunit 6.
    
 0.896
LOC101164346
Uncharacterized protein.
    
 0.896
mapre1
Microtubule-associated protein, RP/EB family, member 1b.
   
 
 0.893
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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