STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGCZSarcoglycan zeta. (324 aa)    
Predicted Functional Partners:
LOC101161925
Sarcoglycan, alpha.
   
 0.870
sspn
Sarcospan (Kras oncogene-associated gene).
   
 0.818
sntb1
Syntrophin, basic 1.
     
 0.737
sgce
Sarcoglycan, epsilon.
   
 0.715
sgcb
Sarcoglycan, beta (dystrophin-associated glycoprotein).
    
 0.710
dag1
Dystroglycan 1.
    
 0.702
LOC101165732
Peptidase S72 domain-containing protein.
    
 0.702
sgcg
Sarcoglycan, gamma.
  
 
0.701
sntg1
Syntrophin, gamma 1.
   
 
 0.661
H2MTB4_ORYLA
Syntrophin, gamma 2.
   
 
 0.661
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.