dec1a protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

dec1a

BHLH protein DEC1a. (400 aa)

Predicted Functional Partners:

per1

0.472

psmb2

0.457

LOC101174341

0.457

PER2

0.454

LOC101161338

0.454

LOC101159817

0.435

LOC101161892

0.418

Nfil3

0.418

rorb

0.409

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101159817	LOC101161892	ENSORLP00000019968	ENSORLP00000020638	Period circadian clock 3.	Nuclear factor, interleukin 3 regulated, member 6.	0.431
LOC101159817	LOC101174341	ENSORLP00000019968	ENSORLP00000019274	Period circadian clock 3.	Nuclear receptor subfamily 1, group D, member 4b.	0.404
LOC101159817	Nfil3	ENSORLP00000019968	ENSORLP00000032613	Period circadian clock 3.	Nuclear factor, interleukin 3 regulated.	0.560
LOC101159817	dec1a	ENSORLP00000019968	ENSORLP00000031544	Period circadian clock 3.	BHLH protein DEC1a.	0.435
LOC101161338	LOC101161892	ENSORLP00000031701	ENSORLP00000020638	Period circadian clock 2.	Nuclear factor, interleukin 3 regulated, member 6.	0.431
LOC101161338	LOC101174341	ENSORLP00000031701	ENSORLP00000019274	Period circadian clock 2.	Nuclear receptor subfamily 1, group D, member 4b.	0.404
LOC101161338	Nfil3	ENSORLP00000031701	ENSORLP00000032613	Period circadian clock 2.	Nuclear factor, interleukin 3 regulated.	0.560
LOC101161338	dec1a	ENSORLP00000031701	ENSORLP00000031544	Period circadian clock 2.	BHLH protein DEC1a.	0.454
LOC101161892	LOC101159817	ENSORLP00000020638	ENSORLP00000019968	Nuclear factor, interleukin 3 regulated, member 6.	Period circadian clock 3.	0.431
LOC101161892	LOC101161338	ENSORLP00000020638	ENSORLP00000031701	Nuclear factor, interleukin 3 regulated, member 6.	Period circadian clock 2.	0.431
LOC101161892	LOC101174341	ENSORLP00000020638	ENSORLP00000019274	Nuclear factor, interleukin 3 regulated, member 6.	Nuclear receptor subfamily 1, group D, member 4b.	0.508
LOC101161892	PER2	ENSORLP00000020638	ENSORLP00000019352	Nuclear factor, interleukin 3 regulated, member 6.	Period circadian regulator 2.	0.431
LOC101161892	dec1a	ENSORLP00000020638	ENSORLP00000031544	Nuclear factor, interleukin 3 regulated, member 6.	BHLH protein DEC1a.	0.418
LOC101161892	per1	ENSORLP00000020638	ENSORLP00000008703	Nuclear factor, interleukin 3 regulated, member 6.	Period homolog 1.	0.431
LOC101161892	rorb	ENSORLP00000020638	ENSORLP00000015578	Nuclear factor, interleukin 3 regulated, member 6.	RAR-related orphan receptor B.	0.429
LOC101174341	LOC101159817	ENSORLP00000019274	ENSORLP00000019968	Nuclear receptor subfamily 1, group D, member 4b.	Period circadian clock 3.	0.404
LOC101174341	LOC101161338	ENSORLP00000019274	ENSORLP00000031701	Nuclear receptor subfamily 1, group D, member 4b.	Period circadian clock 2.	0.404
LOC101174341	LOC101161892	ENSORLP00000019274	ENSORLP00000020638	Nuclear receptor subfamily 1, group D, member 4b.	Nuclear factor, interleukin 3 regulated, member 6.	0.508
LOC101174341	Nfil3	ENSORLP00000019274	ENSORLP00000032613	Nuclear receptor subfamily 1, group D, member 4b.	Nuclear factor, interleukin 3 regulated.	0.508
LOC101174341	PER2	ENSORLP00000019274	ENSORLP00000019352	Nuclear receptor subfamily 1, group D, member 4b.	Period circadian regulator 2.	0.404