STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163138Arrestin_C domain-containing protein. (376 aa)    
Predicted Functional Partners:
txn
Thioredoxin; Belongs to the thioredoxin family.
    
 0.968
H2L4N6_ORYLA
Uncharacterized protein.
    
 0.740
LOC101174746
E3 ubiquitin-protein ligase.
    
 
 0.731
LOC101167949
E3 ubiquitin-protein ligase.
    
 
 0.731
txn2
Thioredoxin 2.
    
 0.666
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.578
ddit4
DNA-damage-inducible transcript 4.
   
 
 0.565
LOC101172160
Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.
    
   0.551
ptpn6
Protein tyrosine phosphatase non-receptor type 6.
    
   0.551
ptpn11
Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.
    
   0.551
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.