STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrip3Asp_protease domain-containing protein. (231 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
 
 0.744
tbc1d30
TBC1 domain family, member 30.
    
 
 0.709
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 
 0.682
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
   
 
 0.682
psmd2
26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.
    
 
 0.595
rnf182
Ring finger protein 182.
   
  
 0.570
ubqln1
Uncharacterized protein.
   
 
 0.525
ubl7
Ubiquitin-like 7b (bone marrow stromal cell-derived).
   
 
 0.525
ubqln4
Ubiquilin 4.
   
 
 0.525
zfand4
Zinc finger, AN1-type domain 4.
   
 
 0.519
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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