STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13BVacuolar protein sorting 13 homolog B. (3969 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 
 0.587
pgk1
Phosphoglycerate kinase.
      
 0.559
ZNF462
Zinc finger protein 462.
      
 0.559
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.518
exoc2
Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
   
  
 0.480
vps45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.473
vps13d
Vacuolar protein sorting 13 homolog D.
   
  
0.471
farsb
Phenylalanyl-tRNA synthetase subunit beta; Belongs to the EF-1-beta/EF-1-delta family.
      
 0.453
ENSORLP00000033705
Spatacsin_C domain-containing protein.
   
  
 0.450
coasy
CoA synthase.
      
 0.443
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.