STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam20bFAM20B glycosaminoglycan xylosylkinase. (409 aa)    
Predicted Functional Partners:
LOC101164404
Fam20C domain-containing protein.
  
 
0.753
LOC110015368
Family with sequence similarity 20 member C, like.
  
 
0.752
LOC101167327
FAM20C golgi associated secretory pathway kinase.
  
 
0.750
LOC101163577
FAM20C golgi associated secretory pathway kinase a.
  
 
0.750
LOC100049390
Xylosyltransferase I.
      
 0.730
mbtps1
Membrane-bound transcription factor peptidase, site 1.
     
 0.622
fjx1
Four-jointed box kinase 1.
      
 0.565
uxs1
UDP-glucuronate decarboxylase 1.
      
 0.559
pxylp1
2-phosphoxylose phosphatase 1; Belongs to the histidine acid phosphatase family.
      
 0.558
xylt2
Protein-O-xylosyltransferase II.
      
 0.531
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.