STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175298Chloride intracellular channel 6. (897 aa)    
Predicted Functional Partners:
LOC101169215
Phostensin domain-containing protein.
    
 0.519
map3k7cl
Map3k7 C-terminal like.
   
 
 0.495
GRXCR2
Glutaredoxin and cysteine rich domain containing 2.
     
 0.471
ppt2
Palmitoyl-protein thioesterase 2.
      
 0.449
slc7a4
Solute carrier family 7 member 4.
   
  
 0.446
slc15a4
Solute carrier family 15 member 4.
      
 0.446
susd1
Sushi domain containing 1.
      
 0.443
vars2
Valyl-tRNA synthetase 2, mitochondrial (putative); Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.438
ppil4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
      
 0.438
zbtb12
Zinc finger and BTB domain containing 12, tandem duplicate 1.
    
 
 0.438
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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