STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chordc1Cysteine and histidine-rich domain (CHORD) containing 1b. (340 aa)    
Predicted Functional Partners:
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
   
 
 0.791
ppp5c
Serine/threonine-protein phosphatase.
   
 
 0.724
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 
 0.709
LOC101169506
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
   
 
 0.676
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
   
 
 0.676
trap1
TNF receptor-associated protein 1.
   
 
 0.660
tsc1
TSC complex subunit 1b.
   
 
 0.660
ENSORLP00000031311
Uncharacterized protein.
   
 
 0.660
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
    
 
 0.562
pfdn4
Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.