STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
barhl1BarH-like homeobox 1a. (258 aa)    
Predicted Functional Partners:
C1orf146
Chromosome 1 open reading frame 146.
      
 0.788
SP3
Sp3a transcription factor.
    
 0.530
rce1
Ras converting CAAX endopeptidase 1a.
      
 0.501
meis2
Meis homeobox 2a.
    
 
 0.496
meis1
Meis homeobox 1 b.
    
 
 0.493
TSHZ1
Teashirt zinc finger homeobox 1.
      
 0.457
ptf1a
Pancreas associated transcription factor 1a.
   
  
 0.415
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.